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Paired design
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2
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5
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1.6k
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DESeq2 problem with outlier replacement in paired multi-factor design
deseq2
differential gene expression
multiple factor design
paired design
7.3 years ago
gregory.l.stone
▴ 10
3
votes
4
replies
1.2k
views
Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
ML18
▴ 10
4
votes
3
replies
1.1k
views
Differential profile for only one normal - tumor pair
edger
degs
paired design
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
takumima
▴ 10
3
votes
3
replies
1.4k
views
Difficulties with probable batch effect in paired blocked (treatment and placebo) experiment
deseq2
edger
limma
batch effect
paired design
6.2 years ago
Vladimir Krasikov
▴ 90
2
votes
3
replies
864
views
Drug response pre- and post-treatment between timepoints across conditions
RNA-seq
Paired design
Timecourse
Diagnosis
Covariates
updated 4.2 years ago by
Kevin Blighe
★ 3.9k • written 4.2 years ago by
ibrahim.akkouh
• 0
1
vote
3
replies
1.0k
views
Setting up the design for paired analysis
edger
limma
paired design
5.5 years ago • updated 5.3 years ago
candida.vaz
▴ 50
2
votes
2
replies
1.4k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
5.5 years ago
oakhamwolf
• 0
7 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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